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536 lines
15 KiB
C
536 lines
15 KiB
C
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/* -*- Mode: C++; tab-width: 2; indent-tabs-mode: nil; c-basic-offset: 2 -*- */
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/* ***** BEGIN LICENSE BLOCK *****
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* Version: MPL 1.1/GPL 2.0/LGPL 2.1
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*
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* The contents of this file are subject to the Mozilla Public License Version
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* 1.1 (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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* http://www.mozilla.org/MPL/
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*
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* Software distributed under the License is distributed on an "AS IS" basis,
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* WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License
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* for the specific language governing rights and limitations under the
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* License.
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*
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* The Original Code is Mozilla Communicator client code.
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*
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* The Initial Developer of the Original Code is
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* Netscape Communications Corporation.
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* Portions created by the Initial Developer are Copyright (C) 1998
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* the Initial Developer. All Rights Reserved.
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*
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* Contributor(s):
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* Simon Fraser <sfraser@netscape.com>
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*
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* Alternatively, the contents of this file may be used under the terms of
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* either of the GNU General Public License Version 2 or later (the "GPL"),
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* or the GNU Lesser General Public License Version 2.1 or later (the "LGPL"),
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* in which case the provisions of the GPL or the LGPL are applicable instead
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* of those above. If you wish to allow use of your version of this file only
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* under the terms of either the GPL or the LGPL, and not to allow others to
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* use your version of this file under the terms of the MPL, indicate your
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* decision by deleting the provisions above and replace them with the notice
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* and other provisions required by the GPL or the LGPL. If you do not delete
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* the provisions above, a recipient may use your version of this file under
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* the terms of any one of the MPL, the GPL or the LGPL.
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*
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* ***** END LICENSE BLOCK ***** */
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/*---------------------------------------------------------------------
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Patricia
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D.R. Morrison's "Practical Algorithm To Retrieve Information
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Coded in Alphanumeric"
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This implementation geared towards the storage of data that
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is indexed through arbitrary-length binary keys (e.g. sequence
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data). It also only deals with the case where every key is unique;
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duplicate keys are not entered into the tree, although you may
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do some processing on duplicates in the ReplaceFunction passed
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to PatriciaInsert.
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There is no function to remove nodes from the tree at present.
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The implementation is modular, in the sense that all tree data structures
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are declared in this file, and are not intended to be accessed externally.
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You should only use the functions prototyped in patricia.h, all of which
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start with 'Patricia', and should consider the tree as an opaque data
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structure.
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Ref: Donald R. Morrison. PATRICIA -- practical algorithm to retrieve
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information coded in alphanumeric. Journal of the ACM, 15(4):514-534,
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October 1968
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See Sedgewick, R. Algorithms, 2nd Ed. (1988) for implemenation details.
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-----------------------------------------------------------------------*/
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#include <string.h>
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#include <stdlib.h>
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//#include "utils.h"
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#include "patricia.h"
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#include "nsAEDefs.h" // for AE_ASSERT
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/* Uncomment to print verbose logging on tree activity */
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//#define VERBOSE
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/* Data structures */
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typedef struct TNodeTag {
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unsigned char *key; /* The node's key value in an array of chars */
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short bit; /* The bit that is examined at this node */
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long nodeID; /* Unique ID for each node, used for debugging */
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struct TNodeTag *left; /* Pointer to left child node */
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struct TNodeTag *right; /* Pointer to right child node */
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void *data; /* Pointer to user-defined data structure */
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} TNode;
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typedef struct {
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TNode* headNode; /* Pointer to dummy head node */
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long numKeyBits; /* Size of keys, in bits */
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long keySize; /* Size of keys, in chars (assumed to be 8 bits each) */
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long numNodes; /* Number of nodes in tree */
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} TPatriciaTree;
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/* These macros assume that key is a *[unsigned] char, and that a char is 8 bits big */
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#define TestKeyBit(key, bit) ( (key[bit >> 3] & (1 << (bit & 7))) != 0 )
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#define CompareKeyBits(key1, key2, bit) ( (key1[bit >> 3] & (1 << (bit & 7))) == (key2[bit >> 3] & (1 << (bit & 7))) )
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/*---------------------------------------------------------------------
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MakeNewNode
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Allocates a new node as an object on the heap, and initializes
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the key and bit values to those supplied.
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Entry: key binary key data
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bit bit value
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nodeData user data for this node, if any.
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Exit: return value pointer to the new node, or NULL on error
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-----------------------------------------------------------------------*/
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static TNode *MakeNewNode(TPatriciaTree *tree, const unsigned char *key, short bit, void *nodeData)
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{
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static long nodeID = 0;
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TNode *newNode;
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newNode = (TNode *)calloc(1, sizeof(TNode));
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if (newNode == NULL) return NULL;
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newNode->key = (unsigned char *)calloc(tree->keySize + 1, 1); //last bit must be zero
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if (newNode->key == NULL) {
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free(newNode);
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return NULL;
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}
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memcpy(newNode->key, key, tree->keySize);
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newNode->bit = bit;
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newNode->data = nodeData;
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newNode->nodeID = nodeID;
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nodeID ++;
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return newNode;
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}
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/*---------------------------------------------------------------------
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MakeHeadNode
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Allocates the dummy head node of the tree, which is initialized to
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key field = 000000...
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bits = numKeyBits
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left & right = point to self
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data = NULL
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Exit: return value pointer to the new node, or NULL on error
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-----------------------------------------------------------------------*/
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static TNode *MakeHeadNode(TPatriciaTree *tree)
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{
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TNode *newNode;
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newNode = (TNode *)calloc(1, sizeof(TNode));
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if (newNode == NULL) return NULL;
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newNode->key = (unsigned char *)calloc(tree->keySize + 1, 1); //last bit must be zero
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if (newNode->key == NULL) {
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free(newNode);
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return NULL;
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}
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memset(newNode->key, 0, tree->keySize);
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newNode->bit = tree->numKeyBits;
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newNode->data = NULL;
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newNode->nodeID = -1;
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/* Both self-pointers for the head node */
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newNode->left = newNode;
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newNode->right = newNode;
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return newNode;
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}
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/*---------------------------------------------------------------------
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InternalSearch
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Search the tree for a node with the given key, starting at
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startNode.
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Entry: tree pointer to a tree
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key binary key data
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startNode node to start the search (must NOT be NULL)
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Exit: return value: pointer to found node, or node with upward
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link. The caller must verify whether this
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is the node wanted by comparing keys.
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-----------------------------------------------------------------------*/
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static TNode *InternalSearch(TPatriciaTree *tree, TNode *x, const unsigned char *key)
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{
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TNode *p;
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AE_ASSERT(x, "No node");
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do {
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p = x;
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if (TestKeyBit(key, x->bit))
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x = x->right;
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else
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x = x->left;
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} while (p->bit > x->bit);
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return x;
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}
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/*---------------------------------------------------------------------
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InternalTraverse
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A traverse routine used internally.
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Entry: tree pointer to a tree
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key binary key data
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x node to start the search (must NOT be NULL)
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traverseFunc function called on each node, like this:
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(*traverseFunc)(x->data, x->key, arg1, arg2);
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Exit: return value: 0 if everything OK
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Non-zero value on error
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-----------------------------------------------------------------------*/
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static int InternalTraverse(TPatriciaTree *tree, TNode *x, NodeTraverseFunction traverseFunc, void *arg1, void *arg2)
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{
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TNode *p;
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int err = 0;
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AE_ASSERT(x, "No node");
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AE_ASSERT(x->left && x->right, "Left or right child missing");
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#ifdef VERBOSE
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printf("Visiting node %ld with left %ld and right %ld\n", x->nodeID, x->left->nodeID, x->right->nodeID);
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#endif
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if (x != tree->headNode) {
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err = (*traverseFunc)(x->data, x->key, arg1, arg2);
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if (err != 0) return err;
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}
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p = x->left;
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if (p->bit < x->bit)
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err = InternalTraverse(tree, p, traverseFunc, arg1, arg2);
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if (err != 0) return err;
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p = x->right;
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if (p->bit < x->bit)
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err = InternalTraverse(tree, p, traverseFunc, arg1, arg2);
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return err;
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}
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/*---------------------------------------------------------------------
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TraverseAndFree
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A traverse routine used internall.
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Entry: tree pointer to a tree
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key binary key data
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x node to start the search (must NOT be NULL)
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traverseFunc function called on each node, like this:
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(*traverseFunc)(x->data, x->key, arg1, arg2);
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Exit: return value: 0 if everything OK
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Non-zero value on error
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-----------------------------------------------------------------------*/
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static int TraverseAndFree(TPatriciaTree *tree, TNode *x, NodeFreeFunction freeFunc, void *refCon)
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{
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TNode *p;
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int err = 0;
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AE_ASSERT(x, "No node");
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AE_ASSERT(x->left && x->right, "Left or right child missing");
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p = x->left;
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if (p->bit < x->bit) {
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err = TraverseAndFree(tree, p, freeFunc, refCon);
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if (err != 0) return err;
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}
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p = x->right;
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if (p->bit < x->bit) {
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err = TraverseAndFree(tree, p, freeFunc, refCon);
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if (err != 0) return err;
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}
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err = (*freeFunc)(x->data, x->key, refCon);
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#ifdef VERBOSE
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printf("Freeing node %ld\n", x->nodeID);
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#endif
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free(x->key);
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free(x);
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return err;
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}
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#pragma mark -
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/*---------------------------------------------------------------------
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InitPatriciaTree
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Allocate and initialize a new, empty PatriciaTree.
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Entry: keySize length of the keys, in bits
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Exit: return value A reference to the created PatriciaTree,
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or NULL on error.
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-----------------------------------------------------------------------*/
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PatriciaTreeRef PatriciaInitTree(long numKeyBits)
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{
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TPatriciaTree *tree = NULL;
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tree = (TPatriciaTree *)calloc(1, sizeof(TPatriciaTree));
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if (tree == NULL) return NULL;
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tree->numKeyBits = numKeyBits;
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tree->keySize = (numKeyBits >> 3) + ((numKeyBits & 7) != 0);
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tree->numNodes = 0;
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tree->headNode = MakeHeadNode(tree);
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if (tree->headNode == NULL) {
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free(tree);
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return NULL;
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}
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return (PatriciaTreeRef)tree;
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}
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/*---------------------------------------------------------------------
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PatriciaFreeTree
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Free a Patricia tree and all associate data structures. freeFunc is
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called on each node's node->data. If no freeFunc is supplied, then
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the node->data will NOT be freed.
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Entry: treeRef reference to a previously allocated PatriciaTree
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freeFunc a function that is called on each node->data
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arg pointer to data that is also passed to the free function.
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The free function is called like this: (*freeFunc)(node->data, node->key, arg)
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-----------------------------------------------------------------------*/
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void PatriciaFreeTree(PatriciaTreeRef treeRef, NodeFreeFunction freeFunc, void *refCon)
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{
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TPatriciaTree *tree = (TPatriciaTree *)treeRef;
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if (tree == NULL) return;
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/* Traverse the tree and free the data */
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TraverseAndFree(tree, tree->headNode, freeFunc, refCon);
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free(tree);
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}
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/*---------------------------------------------------------------------
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PatriciaSearch
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Search the tree for the node with the given key.
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Entry: key pointer to binary key data
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data pointer to placeholder for returned data
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If you pass NULL in this argument, no value
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will be returned (i.e. I don't deference 0).
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Exit: return value 1 if key found (data returned in *data)
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0 if key not found (NULL returned in *data)
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-----------------------------------------------------------------------*/
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int PatriciaSearch(PatriciaTreeRef treeRef, const unsigned char *key, void **data)
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{
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TPatriciaTree *tree = (TPatriciaTree *)treeRef;
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TNode *foundNode;
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AE_ASSERT(tree, "Where is my tree?");
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foundNode = InternalSearch(tree, tree->headNode, key);
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AE_ASSERT(foundNode, "Should have found node");
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if (memcmp(foundNode->key, key, tree->keySize) == 0) {
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if (data != NULL)
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*data = foundNode->data;
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return 1;
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} else
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return 0;
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}
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/*---------------------------------------------------------------------
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PatriciaInsert
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Insert a node into the tree with the given key and data.
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Entry: key pointer to binary key data
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replaceFunc function executed when a node with the key we
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are inserting is found in the tree.
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data pointer to node data structure
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Exit: return value 0 if insertion successful
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1 if key already exists
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-1 if some other error
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-----------------------------------------------------------------------*/
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int PatriciaInsert(PatriciaTreeRef treeRef, NodeReplaceFunction replaceFunc, const unsigned char *key, void *data, void *refCon)
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{
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TPatriciaTree *tree = (TPatriciaTree *)treeRef;
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TNode *x, *t, *p;
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short i;
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x = tree->headNode;
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t = InternalSearch(tree, x, key);
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AE_ASSERT(t, "Should have found node");
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if (memcmp(t->key, key, tree->keySize) == 0) {
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if (replaceFunc) (*replaceFunc)(&t->data, t->key, data, refCon);
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return 1; /* It's already there */
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}
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i = tree->numKeyBits - 1;
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while (CompareKeyBits(key, t->key, i))
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i --;
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do {
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p = x;
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x = (TestKeyBit(key, x->bit)) ? x->right : x->left;
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} while (x->bit > i && p->bit > x->bit);
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t = MakeNewNode(tree, key, i, data);
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if (t == NULL) return -1;
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if (TestKeyBit(key, t->bit)) {
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t->right = t;
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t->left = x;
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} else {
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t->right = x;
|
||
|
t->left = t;
|
||
|
}
|
||
|
|
||
|
if (TestKeyBit(key, p->bit))
|
||
|
p->right = t;
|
||
|
else
|
||
|
p->left = t;
|
||
|
|
||
|
#ifdef VERBOSE
|
||
|
printf("Inserted node %ld with left %ld and right %ld\n", t->nodeID, t->left->nodeID, t->right->nodeID);
|
||
|
#endif
|
||
|
|
||
|
tree->numNodes ++;
|
||
|
|
||
|
return 0;
|
||
|
}
|
||
|
|
||
|
|
||
|
/*---------------------------------------------------------------------
|
||
|
|
||
|
PatriciaTraverse
|
||
|
|
||
|
Traverse the tree, executing traverseFunc for each node. It's called like
|
||
|
this:
|
||
|
(*traverseFunc)(node->data, node->key, arg1, arg2);
|
||
|
|
||
|
traverseFunc should return 0 if it completes successfully, or any other
|
||
|
value if there is an error. In this case, the traverse is abruptly terminated.
|
||
|
|
||
|
Entry: treeRef reference to a Patricia tree
|
||
|
traverseFunc function to be called on each node
|
||
|
arg1, arg2 arguments passed to traverseFunc
|
||
|
|
||
|
Exit: return value 0 if traverse competed successfully
|
||
|
-1 if something caused the traverse to
|
||
|
terminate.
|
||
|
|
||
|
-----------------------------------------------------------------------*/
|
||
|
|
||
|
int PatriciaTraverse(PatriciaTreeRef treeRef, NodeTraverseFunction traverseFunc, void *arg, void *refCon)
|
||
|
{
|
||
|
TPatriciaTree *tree = (TPatriciaTree *)treeRef;
|
||
|
|
||
|
return InternalTraverse(tree, tree->headNode, traverseFunc, arg, refCon);
|
||
|
}
|
||
|
|
||
|
|
||
|
/*---------------------------------------------------------------------
|
||
|
|
||
|
PatriciaGetNumNodes
|
||
|
|
||
|
Return the number of nodes in the tree
|
||
|
|
||
|
-----------------------------------------------------------------------*/
|
||
|
|
||
|
long PatriciaGetNumNodes(PatriciaTreeRef treeRef)
|
||
|
{
|
||
|
return ((TPatriciaTree *)treeRef)->numNodes;
|
||
|
}
|